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Publications
Type
Journal article
Thesis
Date
2024
2023
2022
2021
MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with …
Mitja M. Zdouc
,
Jonathan Parra Villalobos
,
...
,
Roger G. Linington
,
Tilmann Weber
,
Marnix H. Medema
DOI
The Natural Products Atlas 3.0: extending the database of microbially derived natural products
The Natural Products Atlas is a database of microbially derived natural products that contains structures, producing organism taxonomy, …
Ella F. Poynton
,
Jeffrey A. Van Santen
,
Matthew Pin
,
Marla Macias Contreras
,
Emily McMann
,
Jonathan Parra Villalobos
,
Brandon Showalter
,
Liana Zaroubi
,
Katherine R. Duncan
,
Roger G. Linington
DOI
Microbe Profile: Pseudonocardia: antibiotics for every niche
Pseudonocardia species comprise a genus of filamentous, sporulating bacteria belonging to the phylum Actinomycetota, formerly …
Bonnie Whatmough
,
Neil A. Holmes
,
Barrie Wilkinson
,
Matthew I. Hutchings
,
Jonathan Parra Villalobos
,
Katherine R. Duncan
DOI
Multi-omics analysis of antagonistic interactions among free-living Pseudonocardia from diverse ecosystems
Actinomycetes are a phylogenetically diverse bacterial group which are widely distributed across terrestrial and aquatic ecosystems. …
Jonathan Parra Villalobos
,
Scott A. Jarmusch
,
Katherine R. Duncan
DOI
Antibiotics from rare actinomycetes, beyond the genus Streptomyces
Throughout the golden age of antibiotic discovery, Streptomyces have been unsurpassed for their ability to produce bioactive …
Jonathan Parra Villalobos
,
Ainsley Beaton
,
Ryan F. Seipke
,
Barrie Wilkinson
,
Matthew I. Hutchings
,
Katherine R. Duncan
DOI
MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters
With an ever-increasing amount of (meta)genomic data being deposited in sequence databases, (meta)genome mining for natural product …
Barbara R Terlouw
,
Jonathan Parra Villalobos
,
...
,
Roger G. Linington
,
Tilmann Weber
,
Marnix H. Medema
DOI
Biogeographical and phylogenetic boundaries of the specialised metabolism of pseudonocardia from marine origin
Multidrug-resistant pathogens have become a global threat. In this context, filamentous actinomycetes have been proven to be an …
Jonathan Parra Villalobos
DOI
ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
Actinobacteria is an ancient phylum of Gram-positive bacteria with a characteristic high GC content to their DNA. The ActinoBase Wiki …
Morgan Anne Feeney
,
Jake Terry Newitt
,
Emily Addington
,
Lis Algora-Gallardo
,
Craig Allan
,
Lucas Balis
,
Anna S. Birke
,
Laia Castaño-Espriu
,
Louise K. Charkoudian
,
Rebecca Devine
,
Damien Gayrard
,
Jacob Hamilton
,
Oliver Hennrich
,
Paul A. Hoskisson
,
Molly Keith-Baker
,
Joshua G. Klein
,
Worarat Kruasuwan
,
David R. Mark
,
Yvonne Mast
,
Rebecca E. McHugh
,
Thomas C. McLean
,
Elmira Mohit
,
John T. Munnoch
,
Jordan Murray
,
Katie Noble
,
Hiroshi Otani
,
Jonathan Parra Villalobos
,
Camila F. Pereira
,
Louisa Perry
,
Linamaria Pintor-Escobar
,
Leighton Pritchard
,
Samuel M. M. Prudence
,
Alicia H. Russell
,
Jana K. Schniete
,
Ryan F. Seipke
,
Nelly Sélem-Mojica
,
Agustina Undabarrena
,
Kristiina Vind
,
Gilles P. Van Wezel
,
Barrie Wilkinson
,
Sarah F. Worsley
,
Katherine R. Duncan
,
Lorena T. Fernández-Martínez
,
Matthew I. Hutchings
DOI
The Natural Products Atlas 2.0: a database of microbially-derived natural products
Within the natural products field there is an increasing emphasis on the study of compounds from microbial sources. This has been …
Jeffrey A. Van Santen
,
Ella F. Poynton
,
Dasha Iskakova
,
Emily McMann
,
Tyler A. Alsup
,
Trevor N. Clark
,
Claire H. Fergusson
,
David P. Fewer
,
Alison H. Hughes
,
Caitlin A. McCadden
,
Jonathan Parra Villalobos
,
Sylvia Soldatou
,
Jeffrey D. Rudolf
,
Elisabeth M-L. Janssen
,
Katherine R. Duncan
,
Roger G. Linington
DOI
Pseudonocardia abyssalis sp. nov. and Pseudonocardia oceani sp. nov., two novel actinomycetes isolated from the deep Southern Ocean
The actinomycetes strains KRD168T and KRD185T were isolated from sediments collected from the deep Southern Ocean and, in this work, …
Jonathan Parra Villalobos
,
Sylvia Soldatou
,
Liam M. Rooney
,
Katherine R. Duncan
DOI
Integrating perspectives in actinomycete research: an ActinoBase review of 2020–21
Last year ActinoBase, a Wiki-style initiative supported by the UK Microbiology Society, published a review highlighting the research of …
Agustina Undabarrena
,
Camila F. Pereira
,
Worarat Kruasuwan
,
Jonathan Parra Villalobos
,
Nelly Sélem-Mojica
,
Kristiina Vind
,
Jana K. Schniete
DOI
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